2006 Publications

  1. Chait BT. “Mass spectrometry: bottom-up or top-down?” Science. 2006 Oct 6;314(5796):65-6. PMID: 17023639
  1. Cristea IM, Carroll JW, Rout MP, Rice CM, Chait BT, MacDonald MR. “Tracking and elucidating alphavirus-host protein interactions.” J Biol Chem. 2006 Oct 6;281(40):30269-78. PMID: 16895903
  1. Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan M.  “Protein complex compositions predicted by structural similarity.” Nucleic Acids Research 31;34(10), 2943-52, 2006. PMC1474056
  1. Devos D, Dokudovskaya S, Williams R, Alber F, Eswar N, Chait BT, Rout MP, Sali A. “Simple fold composition and modular architecture of the nuclear pore complex.” Proc Natl Acad Sci U S A. 2006 Feb 14; 103(7): 2172-7. PMC1413685
  1. Dokudovskaya S, Williams R, Devos D, Sali A, Chait BT, Rout MP. “Protease accessibility laddering: a proteomic tool for probing protein structure.” Structure. 2006 Apr;14 (4):653-60. PMID: 16615907
  1. Guermah M, Palhan VB, Tackett AJ, Chait BT, Roeder RG. “Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates.” Cell. 2006 Apr 21;125(2):275-86. PMID: 16630816
  1. Korkin D, Davis FP, Alber F, Luong T, Shen MY, Lucic V, Kennedy MB, Sali A. “Structural modeling of protein interactions by analogy: application to PSD-95.” PLoS Comput Biol. 2006 Nov 10;2(11):e153. Epub 2006 Oct 4. PMC1635541
  1. Lloyd AG, Tateishi S, Bieniasz PD, Muesing MA, Yamaizumi M and Mulder LC. “Effect of DNA repair protein Rad18 on viral infection.” PLoS Pathog. 2006 May;2(5):e40. Epub 2006 May 19. PMC1463017
  1. Low A and Muesing MA. “Understanding and inhibiting integrase in the treatment of HIV disease.” PRN Notebook 11: 6-11, Nov. 2006.
  1. McBride KM, Gazumyan A, Woo EM, Barreto VM, Robbiani DF, Chait BT, Nussenzweig MC. “Regulation of hypermutation by activation-induced cytidine deaminase phosphorylation.” Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8798-803. Epub 2006 May 24. PMC1482658
  1. Saleem RA, Smith JJ, Aitchison JD. “Proteomics of the peroxisome.” Biochim Biophys Acta. 2006 Dec;1763(12):1541-51. Epub 2006 Sep 12. PMC1858641
  1. Shen MY, Sali A. “Statistical potential for assessment and prediction of protein structures.” Protein Sci. 2006 Nov;15(11):2507-24. PMC2242414
  1. Smith JJ, Sydorskyy Y, Marelli M, Hwang D, Bolouri H, Rachubinski RA, Aitchison JD. “Expression and functional profiling reveal distinct gene classes involved in fatty acid metabolism.” Mol Syst Biol. 2006;2:2006.0009. Epub 2006 Feb 21. PMC1681483
  1. Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, Patel DJ, Aitchison JD, Tackett AJ, Allis CD. “Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs.” Mol Cell. 2006 Dec 8;24(5):785-96. PMID: 17157260
  1. Wang QJ, Ding Y, Kohtz DS, Mizushima N, Cristea IM, Rout MP, Chait BT, Zhong Y, Heintz N, Yue Z. “Induction of autophagy in axonal dystrophy and degeneration.” J Neurosci. 2006 Aug 2;26(31):8057-68. PMID: 16885219