2009 Publications

  1. DeGrasse JA, DuBois KN, Devos D, Siegel TN, Sali A, Field MC, Rout MP, Chait BT. “Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor.” Mol Cell Proteomics. 2009 Sep;8(9):2119-30. PMC2742445
  1. Fernandez-Martinez J, Rout MP. “Nuclear pore complex biogenesis.” Curr Opin Cell Biol. 2009 Aug;21(4):603-12. Epub 2009 Jun 11. Review. PMC2749478
  1. Fornes O, Aragues R, Espadaler J, Marti-Renom MA, Sali A, Oliva B. “ModLink+: improving fold recognition by using protein-protein interactions.” Bioinformatics. 2009 Jun 15;25(12):1506-12. doi: 10.1093/bioinformatics/btp238. Epub 2009 Apr 8. PMC2687990
  1. Förster F, Lasker K, Beck F, Nickell S, Sali A, Baumeister W. “An Atomic Model AAA-ATPase/20S core particle sub-complex of the 26S proteasome.” Biochem Biophys Res Commun 388, 228-233, 2009. PMC2771176
  1. Gradolatto A, Smart SK, Byrum S, Blair LP, Rogers RS, Kolar EA, Lavender H, Larson SK, Aitchison JD, Taverna SD, Tackett AJ. “A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity.” Mol Cell Biol. 2009 Sep;29(17):4604-11. Epub 2009 Jul 6. PMC2725702
  1. Jovanovic-Talisman T, Tetenbaum-Novatt J, McKenney AS, Zilman A, Peters R, Rout MP, Chait BT. “Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.” Nature. 2009 Feb 19;457(7232):1023-7. PMC2764719
  1. Lasker K, Topf M, Sali A, Wolfson HJ. “Inferential optimization for simultaneous fitting of multiple components into a cryoEM map of their assembly.” J Mol Biol 2009 Apr 24;388(1):180-94. Epub 2009 Feb 20. PMC2680734
  1. Lew DJ, Rout MP. “Cell structure and dynamics.” Curr Opin Cell Biol. 2009 Feb;21(1):1-3. PMC2676332
  1. Lezon T, Sali A, Bahar I. “Global motions of the nuclear pore complex: Insights from Elastic Network Models.” PLoS Comp Biol 5, e1000496, 2009. PMC2725293
  1. Low A, Prada N, Topper M, Vaida F, Castor D, Mohri H, Hazuda D, Muesing M, Markowitz M. “Natural polymorphisms of human immunodeficiency virus type 1 integrase and inherent susceptibilities to a panel of integrase inhibitors.” Antimicrob Agents Chemother, 2009 Oct;53(10):4275-82. Epub 2009 Aug 3. PMC2764199
  1. Nickell S, Beck F, Scheres SHW, Korinek A, Forster F, Lasker K, Mihalache O, Sun N, Nagy I, Sali A, Plitzko J, Carazo J.-M, Mann M, Baumeister W. “Insights into the Molecular Architecture of the 26S Proteasome.” Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):11943-7. Epub 2009 Jul 6. PMC2715492
  1. Oeffinger M, Zenklusen D, Ferguson A, Wei KE, El Hage A, Tollervey D, Chait BT, Singer RH, Rout MP. “Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA.” Mol Cell. 2009 Dec 11;36(5):768-81. PMC2806520
  1. Russel D, Lasker K, Phillips J, Schneidman-Duhovny D, Velazquez-Muriel JA, Sali A. “The structural dynamics of macromolecular processes.” Curr Opin Cell Biol 21, 97-108, 2009. PMC2774249
  1. Selimi F, Cristea IM, Heller E, Chait BT, Heintz N. “Proteomic studies of a single CNS synapse type: the parallel fiber/purkinje cell synapse.” PLoS Biology, 2009 Apr 14;7(4):e83. PMC2672601
  1. Shmulevich I, Aitchison JD. “Deterministic and stochastic models of genetic regulatory networks.” Methods Enzymol. 2009;467:335-56. doi: 10.1016/S0076-6879(09)67013-0. PMC2725293
  1. Smith JJ and Aitchison JD. “Regulation of peroxisome dynamics.” Curr Opin Cell Biol.  Feb;21(1):119-26. Epub 2009 Jan 31. PMC2681484
  1. Wan Y, Saleem RA, Ratushny AV, Roda O, Smith JJ, Lin CH, Chiang JH, Aitchison JD. “Role of the histone variant H2A.Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes.” Mol Cell Biol, 2009 May;29(9):2346-58. Epub 2009 Mar 9. PMC2668375
  1. Yue Z, Holstein G, Chait BT, Wang QJ. “Using genetic mouse models to study the biology and pathology of autophagy in the central nervous system.” Methods in Enzymology. 2009;453:159-80. PMID: 19216906
  1. Zhong Y, Wang QJ, Li X, Chait BT, Heintz N, Yue Z. “Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex.” Nature Cell Biology. 2009 Apr;11(4):468-76. Epub 2009 Mar 8. PMC2664389